PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100292.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 442aa    MW: 50155 Da    PI: 7.7456
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.8e-07731127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ykt+lC+ ++r G C++   C+FaHg+
  XP_011100292.1  7 YKTKLCMLYQR-GRCSR-QYCNFAHGE 31
                    9**********.*****.*******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-10335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.69E-5435IPR000571Zinc finger, CCCH-type
SMARTSM003560.007631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.296632IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVEKKLYKTK LCMLYQRGRC SRQYCNFAHG EAELRRSFNG RQEYRGGRDL RERLDRMRSP  60
LHNSPGRGDT KARYSSHVAG DSPRSPGKRI DRNNRKRKQL DGHSDYSGRM SDGTEDQIRD  120
RRQTSSDTKM RIDEQLRELH SEIKMLESDK RQLEVYLEDK VKEADALTLK IHELEMQVSK  180
EKEEGKRFTT KIKKFIKAHN RHLRLQDDLK RSHAQLLKLG EQLDLDAAGP GNADDLKINN  240
TSDDIVGGYA LSPLNEDHMN SSPHRKRSRV TLEARDISNR VNPAGERAEI GKMRVEKLSR  300
RSENRDQVSN SRKPEADRDA YNGRGPLAYE DKSRRGTNLP ADIASADKYK VSETGLLLPS  360
TGIAAHAMDE DVEVVETEDK LPAGVAASTG DETEVTLKGS RLPFLPPPPP PIPQDVYLQY  420
KGDDENVDVD GVDEETVEVD IV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100292.10.0PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA612399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-36C3H family protein